STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1443KEGG: dhd:Dhaf_3457 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor. (123 aa)    
Predicted Functional Partners:
Cpap_1326
Iron (metal) dependent repressor, DtxR family; KEGG: cce:Ccel_0797 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor.
  
     0.723
Cpap_0760
KEGG: cce:Ccel_2462 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
   
    0.664
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.562
metN-2
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.562
Cpap_2386
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cce:Ccel_3369 NADH ubiquinone oxidoreductase 20 kDa subunit.
    
   0.560
Cpap_3220
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cce:Ccel_1686 NADH ubiquinone oxidoreductase 20 kDa subunit.
    
   0.560
Cpap_2335
PFAM: ABC-3 protein; KEGG: cce:Ccel_3413 ABC-3 protein.
  
 
 0.464
Cpap_3925
PFAM: periplasmic solute binding protein; KEGG: cce:Ccel_1156 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 
 0.460
Cpap_3464
FeoA family protein; KEGG: ere:EUBREC_1581 hypothetical protein; PFAM: FeoA family protein; SMART: FeoA family protein.
 
  
 0.441
Cpap_2782
KEGG: pjd:Pjdr2_1153 hypothetical protein.
   
    0.433
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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