STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1503PFAM: Protein of unknown function DUF3560; KEGG: cai:Caci_8988 hypothetical protein. (415 aa)    
Predicted Functional Partners:
Cpap_0427
PFAM: PglZ domain protein; KEGG: tpd:Teth39_0929 alkaline phosphatase domain-containing protein.
   
 
  0.520
Cpap_1504
KEGG: mmx:MmarC6_0538 hypothetical protein.
       0.497
Cpap_3300
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1227 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
    
  0.473
Cpap_0627
KEGG: cce:Ccel_2039 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
   
    0.434
Cpap_0632
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.422
Cpap_2749
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Fibronectin type III domain protein; Dockerin type 1; SMART: cellulose binding type IV; Fibronectin type III domain protein.
   
    0.422
Cpap_2535
KEGG: cce:Ccel_3104 thiamine biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: biotin and thiamin synthesis associated; Elongator protein 3/MiaB/NifB.
   
    0.418
Cpap_3860
TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; KEGG: cbe:Cbei_1520 thiamine biosynthesis protein ThiH; SMART: biotin and thiamin synthesis associated.
   
    0.418
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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