STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1557Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (129 aa)    
Predicted Functional Partners:
Cpap_3150
TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: cce:Ccel_1750 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.
 
 0.996
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.980
Cpap_3786
PFAM: purine or other phosphorylase family 1; KEGG: cce:Ccel_1081 purine or other phosphorylase family 1.
 
 
 0.968
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.966
Cpap_3631
SMART: AAA ATPase; KEGG: cce:Ccel_1435 AAA ATPase.
 
  
 0.913
deoD
KEGG: cce:Ccel_3381 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1.
  
 
 0.907
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
 
 0.883
Cpap_1553
PFAM: PhoH family protein; KEGG: cce:Ccel_0574 PhoH family protein.
  
    0.867
Cpap_3093
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_1803 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
     
 0.831
Cpap_1556
PFAM: diacylglycerol kinase; KEGG: cce:Ccel_0577 diacylglycerol kinase.
  
    0.789
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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