STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1571SMART: regulatory protein MerR; KEGG: cce:Ccel_0592 transcriptional regulator, MerR family. (196 aa)    
Predicted Functional Partners:
Cpap_1607
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
    
 0.756
Cpap_1960
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.753
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
   
  0.748
accA
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
   
  0.748
Cpap_0336
KEGG: cce:Ccel_2928 hypothetical protein.
  
     0.742
Cpap_1949
KEGG: cce:Ccel_0277 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.737
Cpap_1574
KEGG: cce:Ccel_0595 hypothetical protein.
 
   
 0.735
Cpap_1973
PFAM: Colicin V production protein; KEGG: cce:Ccel_0301 hypothetical protein.
  
     0.732
Cpap_0239
KEGG: cce:Ccel_0718 hypothetical protein.
  
     0.729
Cpap_3645
KEGG: cce:Ccel_1448 tetratricopeptide TPR_2.
  
     0.729
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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