STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1580PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE. (845 aa)    
Predicted Functional Partners:
Cpap_3070
PFAM: YD repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein.
  
 
 0.883
Cpap_2088
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cce:Ccel_0008 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
  
  
 0.768
Cpap_2072
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cce:Ccel_3483 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
  
  
 0.741
Cpap_0655
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.728
Cpap_0475
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dau:Daud_0519 phage integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.669
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.650
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
  
 0.633
Cpap_0419
PFAM: integrase family protein; KEGG: dau:Daud_0519 phage integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.603
Cpap_4003
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: tit:Thit_1881 integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.594
Cpap_1073
KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 0.583
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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