STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1650KEGG: cce:Ccel_0666 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator. (376 aa)    
Predicted Functional Partners:
Cpap_1649
PFAM: SNARE associated Golgi protein; KEGG: cce:Ccel_0665 SNARE associated Golgi protein.
     
 0.729
Cpap_1950
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0278 S-layer domain protein.
  
     0.676
Cpap_0343
Glycosyl transferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
 
   
 0.597
Cpap_3533
PFAM: S-layer domain-containing protein; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1376 S-layer domain protein.
  
     0.568
Cpap_2541
KEGG: cce:Ccel_3098 exopolysaccharide biosynthesis protein.
 
     0.562
Cpap_4154
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.529
sepF
Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.521
Cpap_1646
TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: cce:Ccel_0662 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668.
  
     0.496
Cpap_1917
KEGG: cce:Ccel_0262 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Glycosyl transferase, family 4, conserved region; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.468
Cpap_1137
KEGG: cce:Ccel_2334 copper amine oxidase domain protein; manually curated; PFAM: copper amine oxidase-like domain-containing protein.
  
     0.465
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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