STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1687PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cce:Ccel_1654 site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family. (329 aa)    
Predicted Functional Partners:
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
  0.674
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
    
  0.674
Cpap_1688
KEGG: cce:Ccel_1653 hypothetical protein.
       0.550
Cpap_1580
PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE.
  
   
 0.540
Cpap_2161
KEGG: cce:Ccel_0090 phosphoribosyltransferase; manually curated; PFAM: phosphoribosyltransferase.
  
    0.512
Cpap_4024
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ckr:CKR_1611 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.447
Cpap_0847
Cell division protein FtsK/SpoIIIE; KEGG: mfl:Mfl100 DNA translocase (stage III sporulation protein E); PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
  
   
 0.446
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
  
 0.446
Cpap_0390
KEGG: cce:Ccel_2881 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein.
  
    0.439
Cpap_2871
PFAM: protein of unknown function DUF159; KEGG: cce:Ccel_2013 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.426
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: high (96%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.