STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1709Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1646 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein. (611 aa)    
Predicted Functional Partners:
Cpap_1710
KEGG: cce:Ccel_1645 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
 
 
 0.934
Cpap_4174
KEGG: cce:Ccel_2270 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: LytTr DNA-binding region; response regulator receiver.
  
 
 0.823
Cpap_3693
Two component transcriptional regulator, LytTR family; KEGG: cbb:CLD_3504 DNA-binding response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver.
  
 
 0.822
Cpap_3934
KEGG: cce:Ccel_1167 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; LytTr DNA-binding region.
  
 
 0.803
Cpap_3300
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1227 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
 
  
 
0.760
Cpap_3729
Two component transcriptional regulator, LytTR family; Manually curated; PFAM: LytTr DNA-binding region; response regulator receiver; KEGG: cce:Ccel_2646 two component transcriptional regulator, LytTR family; SMART: response regulator receiver.
  
 
 0.753
Cpap_3552
KEGG: cce:Ccel_0995 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
  
 
 0.751
Cpap_2226
KEGG: cce:Ccel_0147 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.
  
 
 0.749
Cpap_2228
KEGG: cce:Ccel_0149 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
  
 
 0.749
Cpap_1146
KEGG: amt:Amet_3804 response regulator receiver/SARP domain-containing protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
     0.741
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.