STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1718KEGG: cce:Ccel_1637 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Cpap_1296
Cold-shock protein DNA-binding; KEGG: tet:TTHERM_00518520 TPR Domain containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; Tetratricopeptide repeat.
   
 0.891
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.884
Cpap_2609
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_2505 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region.
  
 0.805
Cpap_2763
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0502 diguanylate cyclase; SMART: GGDEF domain containing protein.
    
 0.792
Cpap_2581
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.783
Cpap_3590
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.783
Cpap_2277
KEGG: cce:Ccel_0221 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; CHASE3 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
    
 0.769
Cpap_3864
KEGG: gwc:GWCH70_1221 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
    
 0.769
Cpap_2904
Radical SAM domain protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.
  
 0.733
Cpap_1581
KEGG: cce:Ccel_0602 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 0.729
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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