Cpap_1736 protein (Ruminiclostridium papyrosolvens DSM 2782)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Cpap_1736

PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_3319 extracellular solute-binding protein family 3. (275 aa)

Predicted Functional Partners:

Cpap_1738

0.983

Cpap_1737

0.973

Cpap_0521

0.946

Cpap_2717

0.946

Cpap_0562

0.945

Cpap_0520

0.906

Cpap_2718

0.897

Cpap_0561

0.878

Cpap_0560

0.831

Cpap_2609

0.795

Your Current Organism:

Ruminiclostridium papyrosolvens DSM 2782

NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Cpap_0520	Cpap_0521	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.998
Cpap_0520	Cpap_0560	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.830
Cpap_0520	Cpap_0561	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.474
Cpap_0520	Cpap_0562	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cag:Cagg_0335 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.956
Cpap_0520	Cpap_1736	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_3319 extracellular solute-binding protein family 3.	0.906
Cpap_0520	Cpap_1737	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: dsa:Desal_3318 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.445
Cpap_0520	Cpap_1738	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: tpd:Teth39_1763 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.957
Cpap_0520	Cpap_2717	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cce:Ccel_2587 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.957
Cpap_0520	Cpap_2718	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	Manually curated; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; KEGG: cce:Ccel_2588 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.464
Cpap_0521	Cpap_0520	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.998
Cpap_0521	Cpap_0560	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.841
Cpap_0521	Cpap_0561	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.982
Cpap_0521	Cpap_1736	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_3319 extracellular solute-binding protein family 3.	0.946
Cpap_0521	Cpap_1737	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	KEGG: dsa:Desal_3318 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.969
Cpap_0521	Cpap_2718	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	Manually curated; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; KEGG: cce:Ccel_2588 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.991
Cpap_0560	Cpap_0520	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.830
Cpap_0560	Cpap_0521	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.841
Cpap_0560	Cpap_0561	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.962
Cpap_0560	Cpap_0562	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cag:Cagg_0335 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.948
Cpap_0560	Cpap_1736	KEGG: rca:Rcas_1455 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_3319 extracellular solute-binding protein family 3.	0.831