STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1773KEGG: cce:Ccel_1657 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Cpap_1775
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1659 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
     0.654
Cpap_1774
Two component transcriptional regulator, winged helix family; Manually curated; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: cce:Ccel_1658 two component transcriptional regulator, winged helix family; SMART: response regulator receiver.
       0.511
Cpap_1786
PFAM: protein of unknown function DUF134; KEGG: tjr:TherJR_1248 protein of unknown function DUF134; Belongs to the UPF0251 family.
  
     0.499
Cpap_1772
KEGG: cce:Ccel_1555 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
       0.443
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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