STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1779KEGG: ddf:DEFDS_1701 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Cpap_1778
PFAM: Acyl transferase; KEGG: cce:Ccel_0852 acyl transferase.
       0.675
Cpap_3952
KEGG: cce:Ccel_1185 hypothetical protein.
  
     0.499
Cpap_3953
PFAM: RNA-binding protein, predicted; KEGG: cce:Ccel_1186 hypothetical protein.
  
     0.495
Cpap_1780
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dhd:Dhaf_1986 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
       0.490
Cpap_1781
Manually curated; KEGG: dhd:Dhaf_1984 cobyrinic acid ac-diamide synthase.
       0.415
Cpap_1782
KEGG: amt:Amet_1465 cobyrinic acid a,c-diamide synthase.
       0.415
Cpap_1783
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: amt:Amet_1464 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
       0.415
Cpap_2883
KEGG: cce:Ccel_1999 uncharacterized protein contains CXXC motif.
  
     0.403
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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