STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1792PFAM: Uncharacterised conserved protein UCP021328; KEGG: lba:Lebu_1283 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Cpap_2840
KEGG: cpy:Cphy_0991 helix-turn-helix type 11 domain-containing protein.
  
     0.599
Cpap_2828
PFAM: Uncharacterised protein family UPF0066; KEGG: ckr:CKR_0280 hypothetical protein.
  
     0.597
Cpap_4237
KEGG: cce:Ccel_2230 hypothetical protein.
  
     0.596
Cpap_3692
KEGG: cce:Ccel_2638 transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: transcription activator effector binding; regulatory protein MerR.
  
     0.582
Cpap_0895
KEGG: bce:BC2877 zwittermicin A resistance protein ZmaR.
  
     0.557
Cpap_0822
KEGG: cce:Ccel_2418 hypothetical protein.
  
     0.537
Cpap_2368
Regulatory protein MerR; KEGG: cbi:CLJ_B0776 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
  
     0.520
Cpap_4238
KEGG: cce:Ccel_2229 hypothetical protein.
  
     0.516
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.481
Cpap_2370
PFAM: ABC-2 type transporter; KEGG: cbb:CLD_0040 putative drug resistance ABC-2 type transporter, permease protein.
  
     0.464
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.