STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1795KEGG: cba:CLB_0788 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Cpap_3058
PFAM: Rhomboid family protein; KEGG: cce:Ccel_1860 rhomboid family protein.
  
   0.787
Cpap_1695
PFAM: Spore coat protein CotH; Carbohydrate-binding CenC domain protein; KEGG: bfr:BF1549 hypothetical protein.
  
  
  0.771
Cpap_2747
PFAM: WD40-like beta Propeller containing protein; KEGG: bth:BT_4426 hypothetical protein.
  
     0.765
Cpap_2748
Ricin B lectin; KEGG: caa:Caka_0968 surface layer protein; PFAM: Ricin B lectin; Dockerin type 1; SMART: Ricin B lectin.
  
     0.753
Cpap_1229
PFAM: Dockerin type 1; KEGG: cce:Ccel_1655 cellulosome protein dockerin type I.
  
     0.730
Cpap_2444
KEGG: cce:Ccel_3327 hypothetical protein.
  
     0.718
Cpap_2221
KEGG: cce:Ccel_0142 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; SMART: Helix-turn-helix, AraC domain.
  
     0.678
Cpap_1424
Manually curated; PFAM: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_3463 carbohydrate-binding family 9; SMART: Ig domain protein group 2 domain protein.
  
     0.658
Cpap_1805
PFAM: phosphopantetheine-binding; KEGG: bpu:BPUM_0634 hypothetical protein.
 
     0.635
Cpap_3316
KEGG: cce:Ccel_1244 hypothetical protein; manually curated; PFAM: glutaredoxin 2.
  
     0.630
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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