STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1808KEGG: gur:Gura_3089 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB. (459 aa)    
Predicted Functional Partners:
Cpap_1201
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.765
Cpap_1202
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.752
Cpap_3829
Radical SAM domain protein; KEGG: mxa:MXAN_4597 putative methyltransferase; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.751
Cpap_1811
PFAM: peptidase U32; KEGG: gbm:Gbem_1027 peptidase U32.
 
     0.707
Cpap_1807
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: xne:XNC1_1710 3-hydroxyacyl-CoA dehydrogenase involved in xenocoumacin synthesis.
     
 0.631
Cpap_1806
TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: bpu:BPUM_0633 methoxymalonyl-ACP biosynthesis protein.
 
     0.627
Cpap_1809
AMP-dependent synthetase and ligase; KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; Male sterility domain; Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; SMART: Polyketide synthase, beta-ketoacyl synthase region; Polyketide synthase, phosphopantetheine-binding; Polyketide synthase/Fatty acid synthase, KR.
  
    0.612
Cpap_1805
PFAM: phosphopantetheine-binding; KEGG: bpu:BPUM_0634 hypothetical protein.
 
     0.610
Cpap_1810
Hypothetical protein; KEGG: syg:sync_0859 lipase/esterase.
       0.605
Cpap_1802
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cyt:cce_3779 mRNA-binding protein.
 
  
  0.577
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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