STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1829PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0993 carbohydrate-binding family 9. (1967 aa)    
Predicted Functional Partners:
Cpap_4000
PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein.
  
    0.713
Cpap_0005
PFAM: copper amine oxidase-like domain-containing protein; KEGG: lsp:Bsph_3063 hypothetical protein.
  
     0.694
Cpap_0448
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_0075 anion ABC transporter, anion-binding protein.
  
     0.692
Cpap_1157
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
  
 
   0.690
Cpap_3893
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1126 copper amine oxidase domain protein.
  
     0.684
Cpap_4103
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_2334 copper amine oxidase domain protein.
  
     0.634
Cpap_3313
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; esterase; Dockerin type 1; SMART: cellulose binding type IV.
  
 
   0.630
Cpap_3304
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; esterase; SMART: cellulose binding type IV.
  
 
   0.619
Cpap_3303
Glycoside hydrolase family 43; KEGG: cce:Ccel_1231 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.617
Cpap_3307
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_1235 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.608
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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