STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1868KEGG: cth:Cthe_1445 uncharacterized Zn-finger protein. (81 aa)    
Predicted Functional Partners:
Cpap_1869
Regulatory protein TetR; KEGG: dsy:DSY2791 hypothetical protein; manually curated; PFAM: regulatory protein TetR.
 
     0.930
Cpap_1866
PFAM: Carboxymuconolactone decarboxylase; KEGG: lmc:Lm4b_00688b hypothetical protein.
 
     0.900
Cpap_1867
PFAM: TfoX domain-containing protein; KEGG: clj:CLJU_c35100 hypothetical protein.
 
     0.816
Cpap_4092
KEGG: cpy:Cphy_2164 hypothetical protein.
  
     0.519
Cpap_1870
Transcriptional regulator, XRE family; KEGG: cdf:CD1126A putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.491
Cpap_1871
KEGG: cbe:Cbei_3550 hypothetical protein.
       0.491
Cpap_3442
KEGG: cce:Ccel_1336 hypothetical protein.
  
     0.431
Cpap_1568
KEGG: cth:Cthe_1254 hypothetical protein.
  
     0.425
Cpap_4093
KEGG: cce:Ccel_2345 hypothetical protein.
  
     0.401
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.