STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1882KEGG: cce:Ccel_0227 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Cpap_1883
KEGG: cce:Ccel_0228 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
  
 0.782
Cpap_3731
PFAM: S-layer domain-containing protein; Listeria/Bacterioides repeat-containing protein; KEGG: cce:Ccel_2644 cell wall/surface repeat protein.
  
 
 0.758
Cpap_3422
KEGG: dhd:Dhaf_3722 ABC transporter related; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase.
   
 
 0.676
Cpap_1881
KEGG: cce:Ccel_0226 hypothetical protein.
       0.630
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
   
   0.613
Cpap_4090
KEGG: cce:Ccel_2355 protein of unknown function DUF214.
   
 
 0.612
Cpap_4091
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_2355 protein of unknown function DUF214.
   
 
 0.612
Cpap_1143
Protein of unknown function DUF214; KEGG: ctc:CTC01418 putative permease; manually curated; PFAM: protein of unknown function DUF214.
   
 
 0.599
Cpap_1310
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1525 hypothetical protein.
   
 
 0.599
Cpap_2767
Protein of unknown function DUF214; KEGG: sak:SAK_0172 permease, putative; manually curated; PFAM: protein of unknown function DUF214.
   
 
 0.599
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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