STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1905KEGG: cce:Ccel_0250 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Cpap_1904
PFAM: VTC domain; KEGG: cce:Ccel_0249 hypothetical protein.
 
    0.961
Cpap_1906
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_0251 spore coat protein CotH.
 
     0.939
Cpap_3254
PFAM: VTC domain; KEGG: cth:Cthe_1407 hypothetical protein.
 
    0.880
Cpap_3409
PFAM: VTC domain; KEGG: cce:Ccel_1304 hypothetical protein.
 
    0.880
Cpap_3256
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_0251 spore coat protein CotH.
 
     0.784
Cpap_3408
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_1303 spore coat protein CotH.
 
     0.783
Cpap_0757
Manually curated; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: cce:Ccel_2465 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.
  
 
 0.483
Cpap_1966
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cce:Ccel_0294 ATPase, P-type (transporting), HAD superfamily, subfamily IC; SMART: cation transporting ATPase domain protein.
  
 
 0.483
Cpap_3227
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: mmx:MmarC6_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC; SMART: cation transporting ATPase domain protein.
  
 
 0.483
Cpap_0621
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
   0.470
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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