STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1929KEGG: bcg:BCG9842_B3621 hypothetical protein. (778 aa)    
Predicted Functional Partners:
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
  
 
  0.861
Cpap_3849
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_1099 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
  0.857
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
 
  
  0.852
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
  0.814
Cpap_3444
KEGG: cce:Ccel_1338 protein serine/threonine phosphatase; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; protein phosphatase 2C domain protein.
 
 
   0.802
Cpap_3070
PFAM: YD repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein.
  
 0.788
Cpap_2613
KEGG: cce:Ccel_2508 hypothetical protein.
  
  
  0.780
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
    0.774
Cpap_0258
PFAM: Dockerin type 1; KEGG: cce:Ccel_0736 cellulosome protein dockerin type I.
  
     0.773
Cpap_2607
KEGG: cce:Ccel_2502 hypothetical protein.
  
     0.773
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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