STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1937Hypothetical protein; KEGG: smf:Smon_0442 MscS mechanosensitive ion channel. (157 aa)    
Predicted Functional Partners:
Cpap_1938
PFAM: cyclase family protein; KEGG: sde:Sde_2775 cyclase.
       0.565
Cpap_1936
PFAM: phosphopantetheine-binding; KEGG: plm:Plim_3122 phosphopantetheine-binding protein.
       0.563
Cpap_1939
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bbl:BLBBGE_037 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase.
       0.442
Cpap_1934
PFAM: AMP-dependent synthetase and ligase; KEGG: ate:Athe_0789 AMP-dependent synthetase and ligase.
       0.437
Cpap_1935
PFAM: thioesterase superfamily protein; KEGG: coc:Coch_1937 thioesterase superfamily protein.
       0.437
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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