STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1958PFAM: polysaccharide deacetylase; Dockerin type 1; KEGG: cce:Ccel_0286 polysaccharide deacetylase. (308 aa)    
Predicted Functional Partners:
Cpap_2959
PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase.
  
     0.770
Cpap_3393
PFAM: glycosyl transferase family 2; KEGG: gym:GYMC10_0383 glycosyl transferase family 2.
 
 
 0.761
Cpap_2004
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2.
  
 
 0.530
Cpap_3078
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_1816 glycosyl transferase family 2.
  
 
 0.530
Cpap_2159
KEGG: cce:Ccel_0088 hypothetical protein.
   
 
 0.509
Cpap_3875
KEGG: cce:Ccel_1111 glycoside hydrolase family 18; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding lysin domain; SMART: chitinase II; Peptidoglycan-binding LysM.
 
    
 0.427
Cpap_1959
KEGG: cce:Ccel_0287 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
       0.405
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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