STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1993Flavodoxin/nitric oxide synthase; KEGG: cce:Ccel_0321 beta-lactamase domain protein; PFAM: flavodoxin/nitric oxide synthase; SMART: beta-lactamase domain protein. (396 aa)    
Predicted Functional Partners:
Cpap_0796
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_0200 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.902
Cpap_1434
Desulfoferrodoxin; KEGG: cce:Ccel_3474 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein.
  
 0.735
Cpap_2398
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cce:Ccel_3357 rubredoxin-type Fe(Cys)4 protein.
 
  
 0.732
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
 
    0.599
Cpap_0527
PFAM: Rubrerythrin; KEGG: cce:Ccel_0893 rubrerythrin.
 
  
 0.515
Cpap_0729
KEGG: cce:Ccel_2484 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.
  
  
 0.507
Cpap_2252
TIGRFAM: hemerythrin-like metal-binding protein; KEGG: cce:Ccel_0173 hemerythrin-like metal-binding protein.
  
  
 0.507
Cpap_2244
PFAM: nucleoside recognition domain protein; KEGG: cce:Ccel_0165 nucleoside recognition domain protein.
   
    0.503
Cpap_3051
PFAM: Rubrerythrin; KEGG: cce:Ccel_1869 rubrerythrin.
 
  
 0.473
Cpap_1994
KEGG: cce:Ccel_0322 NifU-like domain-containing protein.
  
  
 0.456
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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