Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cpap_2004PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2. (420 aa)    
Predicted Functional Partners:
Cpap_1296
Cold-shock protein DNA-binding; KEGG: tet:TTHERM_00518520 TPR Domain containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; Tetratricopeptide repeat.
  
 
 0.712
Cpap_1581
KEGG: cce:Ccel_0602 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
  
 
 0.712
Cpap_3058
PFAM: Rhomboid family protein; KEGG: cce:Ccel_1860 rhomboid family protein.
  
 
 0.669
Cpap_2005
PFAM: glycoside hydrolase 15-related; KEGG: cce:Ccel_0335 glycoside hydrolase 15-related.
 
   
 0.643
Cpap_1023
KEGG: cce:Ccel_0432 hypothetical protein.
  
 
 0.632
Cpap_2059
KEGG: cce:Ccel_0390 hypothetical protein.
  
 
 0.632
Cpap_3954
KEGG: cce:Ccel_1187 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein.
  
 
 0.632
Cpap_0492
KEGG: cce:Ccel_0551 hypothetical protein.
  
 
 0.617
Cpap_0882
KEGG: ctc:CTC01937 sporulation initiation inhibitor soj family protein.
  
 
 0.617
Cpap_2087
KEGG: cce:Ccel_0007 cobyrinic acid ac-diamide synthase.
  
 
 0.617
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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