Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cpap_2005PFAM: glycoside hydrolase 15-related; KEGG: cce:Ccel_0335 glycoside hydrolase 15-related. (644 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.934
Cpap_0829
TIGRFAM: alpha-glucan phosphorylase; KEGG: cce:Ccel_2215 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
 
 
 0.933
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.676
Cpap_4071
KEGG: bmq:BMQ_3647 hypothetical protein.
   
    0.647
Cpap_2004
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2.
 
   
 0.643
Cpap_1400
PFAM: aminoglycoside phosphotransferase; KEGG: btk:BT9727_1911 aminoglycoside phophotransferase family protein.
  
     0.574
disA
DNA integrity scanning, DisA, linker region; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis.
 
     0.570
Cpap_4155
TIGRFAM: glycogen debranching enzyme; KEGG: cce:Ccel_2288 glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase.
 
   
 0.561
Cpap_2354
KEGG: cce:Ccel_3399 hypothetical protein.
  
     0.558
Cpap_0939
PFAM: Carbohydrate binding family 25; KEGG: cce:Ccel_2169 carbohydrate-binding family 25 protein.
  
   
 0.505
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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