STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2012KEGG: cce:Ccel_0343 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase. (544 aa)    
Predicted Functional Partners:
Cpap_4180
KEGG: cce:Ccel_2264 hypothetical protein.
  
 
 0.783
Cpap_1063
KEGG: cce:Ccel_0468 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
  
 
 0.770
Cpap_3579
KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
  
 
 0.770
Cpap_2478
Glycosyl transferase family 2; KEGG: bld:BLi00807 hypothetical protein; PFAM: glycosyl transferase family 2; SMART: Tetratricopeptide repeat.
  
  
 0.729
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
       0.697
Cpap_2010
KEGG: cce:Ccel_0341 PilT protein domain protein; PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc.
       0.613
Cpap_2009
PFAM: transcription factor CarD; KEGG: cce:Ccel_0340 transcriptional regulator, CarD family.
       0.556
Cpap_3843
KEGG: tna:CTN_0396 ABC transporter, transmembrane region; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
  
0.509
Cpap_3844
KEGG: dth:DICTH_1544 putative ABC-transporter TycD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
 
  
0.507
Cpap_1006
KEGG: bbe:BBR47_10410 ABC transporter ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
 
  
0.506
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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