Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2020PFAM: Uncharacterised conserved protein UCP020606; KEGG: cce:Ccel_0351 putative integral membrane protein. (228 aa)    
Predicted Functional Partners:
Cpap_2021
UV-endonuclease UvdE; KEGG: cce:Ccel_0352 putative UV damage endonuclease; TIGRFAM: UV-endonuclease UvdE; PFAM: UV-endonuclease UvdE.
 
     0.761
Cpap_2019
PFAM: GtrA family protein; KEGG: cce:Ccel_0350 GtrA family protein.
       0.520
Cpap_2022
KEGG: cno:NT01CX_1543 hypothetical protein.
       0.472
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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