STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2045KEGG: cce:Ccel_0376 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Cpap_2046
PFAM: Protein of unknown function DUF2953; KEGG: cce:Ccel_0377 hypothetical protein.
  
    0.911
Cpap_2044
KEGG: cce:Ccel_0375 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
    0.823
Cpap_2047
PFAM: Sporulation protein YtfJ; KEGG: cce:Ccel_0378 hypothetical protein.
  
    0.729
Cpap_2043
TIGRFAM: beta-galactosidase; KEGG: cce:Ccel_0374 beta-galactosidase; PFAM: glycoside hydrolase family 1.
       0.590
Cpap_2042
KEGG: cce:Ccel_0373 ATP-dependent DNA helicase PcrA; TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase.
       0.535
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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