STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2070KEGG: cce:Ccel_0401 putative anti-sigma regulatory factor, serine/threonine protein kinase. (144 aa)    
Predicted Functional Partners:
Cpap_2067
KEGG: cce:Ccel_0398 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
 
 0.986
Cpap_2394
Protein serine/threonine phosphatase; KEGG: cce:Ccel_3361 putative PAS/PAC sensor protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein.
 
 0.929
Cpap_2069
KEGG: cce:Ccel_0400 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein.
 
 
 0.852
Cpap_4157
KEGG: cce:Ccel_2286 anti-sigma-factor antagonist; TIGRFAM: anti-sigma F factor antagonist; anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 
 0.849
Cpap_4159
RNA polymerase, sigma 28 subunit, SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.840
Cpap_4141
Stage II sporulation protein E; KEGG: cce:Ccel_2299 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein.
  
 0.769
Cpap_0634
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2046 hypothetical protein.
  
    0.768
Cpap_0638
Manually curated; TIGRFAM: flagellar motor switch protein FliG; KEGG: cce:Ccel_2050 flagellar motor switch protein G; PFAM: flagellar motor switch protein FliG; MgtE intracellular region.
   
    0.737
Cpap_0642
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.737
Cpap_1919
PFAM: MotA/TolQ/ExbB proton channel; KEGG: cce:Ccel_0264 MotA/TolQ/ExbB proton channel.
   
    0.737
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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