STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2105KEGG: cce:Ccel_0024 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (533 aa)    
Predicted Functional Partners:
Cpap_1088
KEGG: cce:Ccel_0492 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
   
 0.949
Cpap_2082
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.938
Cpap_3651
KEGG: cce:Ccel_1454 hypothetical protein.
    
 0.937
Cpap_0423
PFAM: AAA ATPase central domain protein; KEGG: tit:Thit_1351 hypothetical protein.
   
 0.929
Cpap_0173
SMART: Sel1 domain protein repeat-containing protein; KEGG: lmy:LM5923_1818 hypothetical protein.
   
 0.918
Cpap_1570
KEGG: cce:Ccel_0591 TM2 domain containing protein.
   
 0.918
Cpap_4001
SMART: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein.
   
 0.918
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
  0.904
glpK-2
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
  0.904
Cpap_1819
PFAM: peptidase C1A papain; KEGG: psb:Psyr_2881 peptidase C1A, papain.
    
 0.885
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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