STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2110KEGG: cce:Ccel_0029 hypothetical protein. (641 aa)    
Predicted Functional Partners:
Cpap_2109
PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_0028 protein of unknown function DUF342.
 
     0.850
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.764
Cpap_0303
KEGG: cce:Ccel_2991 hypothetical protein.
  
     0.754
acpS
Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
       0.742
Cpap_2754
KEGG: cce:Ccel_2393 S-layer domain protein; PFAM: copper amine oxidase-like domain-containing protein; SMART: Parallel beta-helix repeat.
  
     0.727
Cpap_1960
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.701
Cpap_1695
PFAM: Spore coat protein CotH; Carbohydrate-binding CenC domain protein; KEGG: bfr:BF1549 hypothetical protein.
  
     0.696
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
     0.680
Cpap_4142
PFAM: transposase IS605 OrfB; KEGG: cce:Ccel_2298 transposase IS605 OrfB.
  
     0.680
Cpap_3337
Transcriptional regulator, LuxR family; KEGG: tex:Teth514_0348 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.673
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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