STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2117TIGRFAM: germination protein YpeB; KEGG: cce:Ccel_0036 germination protein YpeB. (463 aa)    
Predicted Functional Partners:
Cpap_2116
KEGG: cce:Ccel_0035 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.
 
  
 0.981
Cpap_3513
PFAM: cell wall hydrolase SleB; KEGG: cce:Ccel_1357 cell wall hydrolase, SleB.
 
  
 0.855
Cpap_0043
KEGG: cce:Ccel_0523 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
     0.734
Cpap_0651
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.732
Cpap_3116
KEGG: tte:TTE2378 germination protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
     0.726
Cpap_0036
KEGG: amt:Amet_1284 spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
     0.722
Cpap_2430
KEGG: cce:Ccel_3013 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
     0.718
Cpap_3512
KEGG: cce:Ccel_1356 hypothetical protein.
  
     0.715
Cpap_2986
KEGG: cce:Ccel_1915 stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
  
     0.665
Cpap_0034
Manually curated; TIGRFAM: spore germination protein; KEGG: cce:Ccel_0652 spore germination protein; PFAM: Spore germination protein.
 
     0.656
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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