STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2161KEGG: cce:Ccel_0090 phosphoribosyltransferase; manually curated; PFAM: phosphoribosyltransferase. (223 aa)    
Predicted Functional Partners:
Cpap_0645
KEGG: cce:Ccel_2057 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
 
 
 0.931
Cpap_2936
KEGG: cce:Ccel_1955 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.914
Cpap_1648
PFAM: Late competence development protein ComFB; KEGG: cce:Ccel_0664 hypothetical protein.
  
  
 0.892
Cpap_0646
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: cce:Ccel_2058 Mg chelatase, subunit ChlI; SMART: AAA ATPase.
 
  
 0.858
Cpap_2665
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; helix-hairpin-helix motif; KEGG: cce:Ccel_2564 DNA repair protein RadC; SMART: Helix-hairpin-helix DNA-binding class 1; Belongs to the UPF0758 family.
 
    0.834
Cpap_0641
KEGG: cce:Ccel_2053 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.814
Cpap_0390
KEGG: cce:Ccel_2881 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein.
   
  
 0.766
Cpap_0241
PFAM: Uncharacterised protein family UPF0102; KEGG: cce:Ccel_0720 hypothetical protein; Belongs to the UPF0102 family.
 
    0.733
Cpap_1213
KEGG: bth:BT_3588 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
  
    0.729
Cpap_0634
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2046 hypothetical protein.
   
    0.724
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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