STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2177KEGG: cce:Ccel_0108 kelch repeat protein; PFAM: Kelch repeat type 1-containing protein; SMART: Kelch repeat type 1-containing protein. (445 aa)    
Predicted Functional Partners:
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
  0.868
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
    
  0.853
Cpap_1019
KEGG: cce:Ccel_0429 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.
    
  0.797
Cpap_3229
PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_2621 glycoside hydrolase family 9 domain protein Ig domain protein.
    
  0.797
Cpap_2669
KEGG: cce:Ccel_2569 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
   
  0.755
Cpap_0449
KEGG: tmt:Tmath_0092 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.
    
  0.751
Cpap_0952
KEGG: slp:Slip_1811 fibronectin type III domain protein; PFAM: Kelch repeat type 1-containing protein; Fibronectin type III domain protein; SMART: Kelch repeat type 1-containing protein; Fibronectin type III domain protein.
  
  
 
0.708
Cpap_3312
PFAM: coagulation factor 5/8 type domain protein; Dockerin type 1; KEGG: cce:Ccel_1241 carbohydrate binding family 6.
  
  
  0.700
Cpap_3275
PFAM: Dockerin type 1; leucine-rich repeat-containing protein; KEGG: ctc:CTC00495 internalin A-like protein/putative S-layer protein.
  
  
  0.699
Cpap_1880
PFAM: ammonium transporter; KEGG: aba:Acid345_3596 Rh-like protein/ammonium transporter.
  
     0.616
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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