STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2205PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcx:BCA_4766 transporter, EamA family. (319 aa)    
Predicted Functional Partners:
Cpap_2204
PFAM: pyruvate carboxyltransferase; KEGG: cce:Ccel_2177 pyruvate carboxyltransferase.
       0.689
Cpap_2203
AMP-dependent synthetase and ligase; KEGG: sew:SeSA_A2181 putative AMP-binding enzyme; manually curated; PFAM: AMP-dependent synthetase and ligase.
       0.413
Cpap_2201
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: csc:Csac_1953 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.407
Cpap_2202
Arginine decarboxylase; Manually curated; KEGG: sea:SeAg_B2134 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region.
  
  
 0.407
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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