STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
birAbiotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (326 aa)    
Predicted Functional Partners:
Cpap_3162
PFAM: carboxyl transferase; KEGG: cce:Ccel_1738 carboxyl transferase.
 
 
 0.979
Cpap_2616
KEGG: cce:Ccel_2510 protein of unknown function DUF201; manually curated; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp.
  
 0.971
Cpap_1323
PFAM: peptidase M22 glycoprotease; KEGG: cce:Ccel_0800 peptidase M22 glycoprotease.
 
    0.968
Cpap_3163
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cce:Ccel_1737 biotin/lipoyl attachment domain-containing protein.
 
  
 0.962
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
  
    0.960
Cpap_3698
KEGG: cce:Ccel_0932 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: biotin carboxylase domain protein.
  
 0.959
Cpap_3700
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 0.958
Cpap_3699
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
 
 0.951
Cpap_2451
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: cce:Ccel_3322 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.932
Cpap_2512
Radical SAM domain protein; KEGG: cce:Ccel_3189 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated.
  
 
 0.928
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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