STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2224PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_0145 extracellular solute-binding protein family 1. (530 aa)    
Predicted Functional Partners:
Cpap_2223
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0144 binding-protein-dependent transport systems inner membrane component.
 
  0.912
Cpap_2222
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0143 binding-protein-dependent transport systems inner membrane component.
 
 
 0.884
Cpap_2231
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0152 binding-protein-dependent transport systems inner membrane component.
 
  0.787
Cpap_3328
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_1254 binding-protein-dependent transport systems inner membrane component.
  
  0.754
Cpap_2221
KEGG: cce:Ccel_0142 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; SMART: Helix-turn-helix, AraC domain.
  
     0.733
Cpap_2230
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0151 binding-protein-dependent transport systems inner membrane component.
 
 
 0.721
Cpap_2444
KEGG: cce:Ccel_3327 hypothetical protein.
  
     0.720
Cpap_2747
PFAM: WD40-like beta Propeller containing protein; KEGG: bth:BT_4426 hypothetical protein.
  
   
 0.713
Cpap_0354
KEGG: cce:Ccel_2909 ABC transporter related; PFAM: ABC transporter related; TOBE domain-containing protein; SMART: AAA ATPase.
  
 0.712
Cpap_0766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_2457 binding-protein-dependent transport systems inner membrane component.
  
  0.702
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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