STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2234PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cce:Ccel_0155 Orn/Lys/Arg decarboxylase major region. (479 aa)    
Predicted Functional Partners:
Cpap_0802
Agmatinase; KEGG: cce:Ccel_2434 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
  
 0.908
argH
KEGG: cce:Ccel_1344 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
     
 0.839
arcA
Arginine deiminase; KEGG: cce:Ccel_3384 amidinotransferase; PFAM: amidinotransferase.
     
 0.781
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.767
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
 
  0.748
Cpap_1573
PFAM: Aluminium resistance family protein; KEGG: cce:Ccel_0594 aluminium resistance family protein.
 
   
 0.730
Cpap_3895
PFAM: Saccharopine dehydrogenase; KEGG: cce:Ccel_1128 saccharopine dehydrogenase.
    
  0.684
Cpap_3276
PFAM: amidinotransferase; KEGG: mac:MA0792 arginine deiminase.
     
 0.682
argD
KEGG: cce:Ccel_2912 acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.655
Cpap_3080
PFAM: aminotransferase class-III; KEGG: cce:Ccel_1814 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.655
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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