STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2237PFAM: protein of unknown function DUF327; KEGG: cce:Ccel_0158 protein of unknown function DUF327. (155 aa)    
Predicted Functional Partners:
Cpap_2236
PFAM: protein of unknown function DUF970; KEGG: cce:Ccel_0157 protein of unknown function DUF970.
  
    0.846
Cpap_2238
PFAM: DNA polymerase III delta; KEGG: cce:Ccel_0159 DNA polymerase III, delta prime subunit.
       0.820
Cpap_2239
PFAM: PSP1 domain protein; KEGG: cce:Ccel_0160 PSP1 domain protein.
  
  
 0.801
Cpap_2164
PFAM: FlgN family protein; KEGG: cce:Ccel_0093 FlgN family protein.
 
     0.791
Cpap_2162
KEGG: cce:Ccel_0091 regulatory protein, MerR.
 
     0.781
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.759
Cpap_3224
PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein.
 
     0.720
Cpap_0336
KEGG: cce:Ccel_2928 hypothetical protein.
  
     0.718
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
 
    0.718
Cpap_0239
KEGG: cce:Ccel_0718 hypothetical protein.
 
     0.712
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.