STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2244PFAM: nucleoside recognition domain protein; KEGG: cce:Ccel_0165 nucleoside recognition domain protein. (195 aa)    
Predicted Functional Partners:
Cpap_2245
KEGG: cce:Ccel_0166 nucleoside recognition domain protein.
  
 0.999
Cpap_2988
TIGRFAM: stage III sporulation protein AD; KEGG: cce:Ccel_1913 stage III sporulation protein AD.
  
  
 0.635
Cpap_2985
KEGG: cce:Ccel_1916 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
  
  
 0.607
Cpap_3148
TIGRFAM: stage II sporulation protein M; KEGG: cce:Ccel_1752 stage II sporulation protein M.
  
  
 0.601
Cpap_2986
KEGG: cce:Ccel_1915 stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
  
  
 0.600
Cpap_3151
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cce:Ccel_1749 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
  
  
 0.539
Cpap_2952
KEGG: cce:Ccel_1944 stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein.
      
 0.538
Cpap_0710
KEGG: cth:Cthe_1021 stage IV sporulation protein A; manually curated; PFAM: Sporulation stage IV protein A.
  
   
 0.529
Cpap_0109
KEGG: cth:Cthe_1021 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
   
 0.519
Cpap_1993
Flavodoxin/nitric oxide synthase; KEGG: cce:Ccel_0321 beta-lactamase domain protein; PFAM: flavodoxin/nitric oxide synthase; SMART: beta-lactamase domain protein.
   
    0.503
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.