STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2255PFAM: peptidase U32; KEGG: cce:Ccel_0176 peptidase U32. (832 aa)    
Predicted Functional Partners:
Cpap_3670
PFAM: O-methyltransferase family 3; KEGG: cce:Ccel_1473 O-methyltransferase family 3.
  
  
 0.704
Cpap_2254
PFAM: metalloenzyme domain protein; KEGG: cce:Ccel_0175 metalloenzyme domain protein.
       0.671
Cpap_2256
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
    0.651
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.529
Cpap_3631
SMART: AAA ATPase; KEGG: cce:Ccel_1435 AAA ATPase.
  
    0.488
Cpap_2253
Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
     
 0.459
Cpap_0491
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cce:Ccel_0550 UBA/ThiF-type NAD/FAD binding protein.
  
     0.409
Cpap_3101
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
   
    0.407
Cpap_2258
PFAM: NUDIX hydrolase; KEGG: cce:Ccel_0179 NUDIX hydrolase.
       0.403
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.