STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2266PFAM: glycoside hydrolase clan GH-D; KEGG: pjd:Pjdr2_3562 hypothetical protein. (436 aa)    
Predicted Functional Partners:
Cpap_2233
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: cce:Ccel_0154 glycoside hydrolase family 2 TIM barrel.
 
  
  0.859
Cpap_3556
Alpha-galactosidase; Manually curated; KEGG: lrl:LC705_02697 family 36 glycoside hydrolase; PFAM: glycoside hydrolase clan GH-D.
 
  
 0.839
Cpap_3627
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
   
 
  0.817
Cpap_3309
Alpha-galactosidase; PFAM: Carbohydrate binding family 6; glycoside hydrolase clan GH-D; Dockerin type 1; KEGG: cce:Ccel_1237 carbohydrate binding family 6; SMART: cellulose binding type IV.
 
  
0.808
Cpap_0772
Beta-galactosidase; KEGG: cce:Ccel_2451 glycoside hydrolase family 42 domain protein; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
 
 
 0.751
Cpap_1033
PFAM: protein of unknown function DUF1680; KEGG: pjd:Pjdr2_4282 protein of unknown function DUF1680.
 
     0.751
Cpap_3330
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cce:Ccel_1255 alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.746
Cpap_3310
KEGG: cce:Ccel_1238 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Glycoside hydrolase family 59; Dockerin type 1; SMART: cellulose binding type IV.
  
  
  0.745
Cpap_3503
Beta-galactosidase; KEGG: esi:Exig_0375 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
 
 
 0.745
Cpap_1328
KEGG: cce:Ccel_1236 protein of unknown function DUF1680; PFAM: protein of unknown function DUF1680; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
     0.738
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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