STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2286PFAM: N-6 DNA methylase; KEGG: mfe:Mefer_0543 N-6 DNA methylase. (737 aa)    
Predicted Functional Partners:
Cpap_2285
PFAM: restriction modification system DNA specificity domain; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
 
 
 0.991
Cpap_4212
Hypothetical protein; KEGG: kpn:KPN_pKPN4p07085 putative restriction endonuclease S subunit.
 
 
 0.981
Cpap_3984
PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity subunit.
 
 
 0.979
Cpap_3987
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.966
Cpap_4211
Protein of unknown function DUF450; KEGG: rsd:TGRD_039 type I restriction-modification system restriction subunit; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
 
 
 0.944
Cpap_4213
PFAM: N-6 DNA methylase; KEGG: nth:Nther_0795 N-6 DNA methylase.
  
     0.700
Cpap_1239
PFAM: Protein of unknown function DUF3320; KEGG: mvn:Mevan_0087 superfamily I DNA/RNA helicase.
  
  
 0.686
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
  
 
 
 0.626
Cpap_2173
PFAM: flagellar protein FlaG protein; protein of unknown function DUF327; KEGG: cce:Ccel_0104 flagellar protein FlaG protein.
    
   0.561
Cpap_3988
PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_2595 hypothetical protein.
 
     0.539
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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