STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2304KEGG: cce:Ccel_0211 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Cpap_0217
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: cce:Ccel_0702 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone domain protein.
   
 
  0.528
Cpap_2887
KEGG: cce:Ccel_1992 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
     
 0.519
Cpap_1916
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cce:Ccel_0261 CMP/dCMP deaminase zinc-binding.
     
 0.511
Cpap_3029
KEGG: cce:Ccel_1878 sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein.
  
     0.449
Cpap_3889
PFAM: protein of unknown function DUF421; KEGG: cce:Ccel_1122 protein of unknown function DUF421.
  
     0.441
Cpap_0037
PFAM: GerA spore germination protein; KEGG: cce:Ccel_0654 GerA spore germination protein.
  
     0.426
Cpap_3156
Manually curated; TIGRFAM: sporulation protein YtfJ; KEGG: cce:Ccel_1744 sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
     0.411
Cpap_2551
Stage V sporulation protein T; KEGG: cce:Ccel_3088 transcriptional regulator, AbrB family; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.
  
     0.402
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.