STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2318KEGG: dae:Dtox_1548 hypothetical protein. (177 aa)    
Predicted Functional Partners:
cinA
TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; SMART: molybdopterin binding domain.
     
 0.606
Cpap_2317
KEGG: fjo:Fjoh_5041 GCN5-related N-acetyltransferase.
       0.509
Cpap_0966
KEGG: pop:POPTR_1071364 hypothetical protein.
 
     0.444
Cpap_0260
Mannan endo-1,4-beta-mannosidase; KEGG: vvi:100260218 hypothetical protein LOC100260218; PFAM: glycoside hydrolase family 5; Dockerin type 1; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.423
Cpap_3457
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: lpc:LPC_2231 putative S-isoprenylcysteine methyltransferase.
  
     0.404
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.