STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2327KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A. (406 aa)    
Predicted Functional Partners:
Cpap_0026
KEGG: cce:Ccel_0511 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
  
 
  0.850
Cpap_0735
KEGG: cce:Ccel_2478 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
    
  0.821
Cpap_0745
PFAM: peptidase C11 clostripain; KEGG: cth:Cthe_0249 peptidase C11, clostripain.
    
  0.821
Cpap_2410
KEGG: cce:Ccel_3346 regulatory protein, MerR.
  
 
 0.812
Cpap_2954
PFAM: Domain of unknown function DUF3298; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1942 copper amine oxidase domain protein.
  
 
 0.805
Cpap_2162
KEGG: cce:Ccel_0091 regulatory protein, MerR.
  
 
 0.803
Cpap_3612
Hypothetical protein; KEGG: npu:Npun_F0545 WD-40 repeat-containing protein.
    
 0.769
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
  
 0.745
Cpap_3726
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sti:Sthe_0801 UBA/ThiF-type NAD/FAD binding protein.
    
 0.744
Cpap_3862
KEGG: amt:Amet_4236 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein.
    
 0.744
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.