STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2349KEGG: cce:Ccel_3404 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
  
 
 0.792
Cpap_3124
PFAM: Abortive infection protein; KEGG: cce:Ccel_1776 abortive infection protein.
  
 
   0.714
Cpap_2249
PFAM: 3D domain-containing protein; protein of unknown function DUF348; G5 domain protein; KEGG: cce:Ccel_0170 3D domain protein.
   
  
 0.671
Cpap_0996
PFAM: Abortive infection protein; KEGG: cpy:Cphy_0673 abortive infection protein.
    
   0.659
Cpap_1129
PFAM: Abortive infection protein; KEGG: rca:Rcas_2103 abortive infection protein.
    
   0.659
Cpap_1152
PFAM: Abortive infection protein; KEGG: cbf:CLI_0570 CAAX amino terminal protease family protein.
    
   0.659
Cpap_2122
PFAM: Abortive infection protein; KEGG: cce:Ccel_0040 abortive infection protein.
    
   0.659
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
   
 0.571
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
   
    0.529
Cpap_3444
KEGG: cce:Ccel_1338 protein serine/threonine phosphatase; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; protein phosphatase 2C domain protein.
  
    0.523
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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