STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2356PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_3397 S-layer domain protein. (756 aa)    
Predicted Functional Partners:
Cpap_2609
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_2505 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region.
 
 
 0.900
Cpap_3651
KEGG: cce:Ccel_1454 hypothetical protein.
    
 0.876
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
 
  
  0.862
Cpap_3022
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
 
 
 0.835
Cpap_2354
KEGG: cce:Ccel_3399 hypothetical protein.
 
  
  0.828
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
  
  
  0.800
Cpap_3533
PFAM: S-layer domain-containing protein; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1376 S-layer domain protein.
  
  
 0.790
Cpap_1961
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0289 S-layer domain protein.
  
 
 0.788
Cpap_1930
PFAM: S-layer domain-containing protein; Fibronectin type III domain protein; KEGG: cce:Ccel_0274 S-layer domain protein.
  
  
  0.767
Cpap_0388
KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1.
  
 
 0.764
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.