STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2357Hypothetical protein; KEGG: cce:Ccel_3396 outer membrane protein-like protein. (411 aa)    
Predicted Functional Partners:
Cpap_1574
KEGG: cce:Ccel_0595 hypothetical protein.
  
 0.875
Cpap_1823
KEGG: cpy:Cphy_3579 hypothetical protein.
  
 0.875
Cpap_3422
KEGG: dhd:Dhaf_3722 ABC transporter related; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase.
  
 
 0.864
Cpap_1063
KEGG: cce:Ccel_0468 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
  
 0.860
Cpap_3579
KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
  
 0.860
Cpap_4180
KEGG: cce:Ccel_2264 hypothetical protein.
  
 0.860
Cpap_2358
PFAM: outer membrane efflux protein; KEGG: cce:Ccel_3395 hypothetical protein.
       0.782
Cpap_1019
KEGG: cce:Ccel_0429 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.
    
 
 0.571
Cpap_3229
PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_2621 glycoside hydrolase family 9 domain protein Ig domain protein.
    
 
 0.571
Cpap_2356
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_3397 S-layer domain protein.
       0.555
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.