STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2371KEGG: clj:CLJU_c13460 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein. (667 aa)    
Predicted Functional Partners:
Cpap_0614
KEGG: cce:Ccel_2027 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein.
 
 0.945
Cpap_4125
CheA signal transduction histidine kinase; Manually curated; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; KEGG: cce:Ccel_2315 CheA signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein.
 
 0.938
Cpap_0688
KEGG: cce:Ccel_2099 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 0.904
Cpap_1567
KEGG: cce:Ccel_0588 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 0.902
Cpap_0613
KEGG: cce:Ccel_2026 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 0.901
Cpap_4126
KEGG: cce:Ccel_2314 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 0.882
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.878
Cpap_3173
PFAM: MCP methyltransferase CheR-type; KEGG: cce:Ccel_1727 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
 
 0.874
cheB-2
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.853
Cpap_1607
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
 0.841
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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